I would love to hear a fix for this too... soft top leaks on my 07 in the same spot.. has been for years now.. my wifes shoulder was soaked yesterday as i went around a turn and all the water poured in... (it had rained the day before, so water was just laying in there) seemed to have collected inside the plastic piece above the door, where the top "clips" in... not 100% sure.
I did do a bunch of searching on this, and wasn't able to find any diy solutions that really worked.
I do know that my 95 with a bestop never leaked, and my 03 with factory soft top never leaked...:thinking:
Edit: Jackal01, mine does not leak when driving... but when it is parked... water collects above door and drips in. It DOES "unload" later, while driving due to sway, cornering... etc.